With Morphtronics you should try to utilise the use of equip spells, the position effects and summoning lvl 7 synchros.
For the lvl 7 synchros you should be running 3 Scopen and Remoten with most non-tuners being lvl 4.
Very good lvl 7 synchros to use include Power Tool Dragon, Black Rose Dragon, Ancient Fairy Dragon, Seven Swords Warrior, Karakuri Shogun Burei and Ancient Sacred Wyvern.
Equip spells such as United We Stand, Mage Power and Double Tool C&D can be really useful for Power Tool Dragon and Boomboxen.
Cards that can change the battle position of your monsters and also prevent attacks, such as Zero Gravity, can be useful.
What I also noticed is: if you run Morphtronic Accelerator then there's no need to run MST. Run Morphtronic Accelerator at 3 and you should be fine.
Using Morphtronic Cameran with Morphtronic Bind can lock down your opponent.